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Writer's pictureSharan Murugan

USFDA Guidance: Protocol Deviations for Clinical Investigations of Drugs, Biological Products, and Devices

The U.S. Food and Drug Administration (FDA) recently released (26 December 2024) draft guidance titled Protocol Deviations for Clinical Investigations of Drugs, Biological Products, and Devices. This comprehensive guidance addresses a crucial aspect of clinical trials: managing deviations from study protocols. Protocol deviations, if not properly addressed, can undermine the reliability of clinical trial data and, in some cases, compromise participant safety.


Protocol deviations refer to changes, divergences, or departures from the design or procedures defined in an investigational study protocol. These deviations can range from unintentional oversights (e.g., missed tests) to rare intentional deviations approved for specific participants.


Understanding, classifying, and managing these deviations is vital to ensuring trial data's accuracy and trial participants' protection.

The FDA’s guidance categorizes deviations into:

  1. Important Protocol Deviations: These deviations could significantly impact participant safety, data accuracy, or study reliability.

  2. All Other Protocol Deviations: These are minor deviations that do not pose significant risks or impact critical study outcomes.

The guidance also outlines the distinct roles and responsibilities of investigators, sponsors, and Institutional Review Boards (IRBs) in identifying, mitigating, and reporting protocol deviations.


1. Investigators

Investigators are directly responsible for protecting participants' rights and safety. They must report deviations to sponsors and seek prior IRB approval for intentional deviations, except in emergencies. Key responsibilities include:

  • Monitoring and documenting all deviations.

  • Ensuring that protocol flexibility minimizes intentional deviations.

2. Sponsors

Sponsors are tasked with overseeing clinical trials to ensure protocol adherence. Their responsibilities include:

  • Monitoring for deviations through site visits and centralized data review.

  • Training investigators to minimize protocol deviations.

  • Reporting significant deviations to the FDA in study reports.

3. IRBs

IRBs ensure that research protocols protect participant rights and safety. They evaluate significant deviations and review urgent changes made to protocols. Deviations with immediate hazards may be implemented prior to IRB approval but must be reported promptly.


A proactive approach to protocol design can reduce the likelihood of deviations. The guidance recommends:

  • Developing flexible protocols with simplified study designs.

  • Using risk-based monitoring to detect and address deviations early.

  • Engaging stakeholders like trial participants and clinical staff during protocol development.

Quality by Design (QbD) principles are emphasized to identify and mitigate risks to trial integrity and participant safety.


Changes to protocols are sometimes necessary to address unexpected issues during the trial. While these changes usually require prior IRB and FDA approval, exceptions are made for urgent changes to eliminate immediate hazards. Such changes must still be reported as protocol deviations.


This guidance provides a structured framework for managing protocol deviations in clinical investigations. Its recommendations aim to:

  • Ensure consistency in reporting and classification of deviations.

  • Protect participant safety and rights.

  • Maintain the reliability of clinical trial data.

By implementing the FDA’s recommendations, stakeholders in clinical research can navigate the challenges posed by protocol deviations and uphold the highest standards of trial integrity.

For more details, refer to the full guidance document here.



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